diff --git a/vllm/v1/metrics/loggers.py b/vllm/v1/metrics/loggers.py
index 347185d8341e..3f4699281cce 100644
--- a/vllm/v1/metrics/loggers.py
+++ b/vllm/v1/metrics/loggers.py
@@ -169,15 +169,11 @@ class PrometheusStatLogger(StatLoggerBase):
         model_name = vllm_config.model_config.served_model_name
         max_model_len = vllm_config.model_config.max_model_len
 
-        if (len(self.engine_indexes) > 1
-                and vllm_config.speculative_config is not None):
-            raise NotImplementedError("Prometheus metrics with Spec Decoding "
-                                      "with >1 EngineCore per AsyncLLM is not "
-                                      "supported yet.")
-        spec_decode_labelvalues = [
-            vllm_config.model_config.served_model_name,
-            str(self.engine_indexes[0])
-        ]
+        spec_decode_labelvalues: dict[int, list[str]] = {
+            idx: [model_name, str(idx)]
+            for idx in engine_indexes
+        }
+
         self.spec_decoding_prom = self._spec_decoding_cls(
             vllm_config.speculative_config, labelnames,
             spec_decode_labelvalues)
@@ -530,7 +526,7 @@ class PrometheusStatLogger(StatLoggerBase):
 
             if scheduler_stats.spec_decoding_stats is not None:
                 self.spec_decoding_prom.observe(
-                    scheduler_stats.spec_decoding_stats)
+                    scheduler_stats.spec_decoding_stats, engine_idx)
 
         if iteration_stats is None:
             return
diff --git a/vllm/v1/spec_decode/metrics.py b/vllm/v1/spec_decode/metrics.py
index 2aa8962f5739..282e6f65e7ab 100644
--- a/vllm/v1/spec_decode/metrics.py
+++ b/vllm/v1/spec_decode/metrics.py
@@ -140,27 +140,32 @@ class SpecDecodingProm:
         self,
         speculative_config: Optional[SpeculativeConfig],
         labelnames: list[str],
-        labelvalues: list[str],
+        per_engine_labelvalues: dict[int, list[str]],
     ):
         self.spec_decoding_enabled = speculative_config is not None
         if not self.spec_decoding_enabled:
             return
 
-        self.counter_spec_decode_num_drafts = \
-            self._counter_cls(
-                name="vllm:spec_decode_num_drafts",
-                documentation="Number of spec decoding drafts.",
-                labelnames=labelnames).labels(*labelvalues)
-        self.counter_spec_decode_num_draft_tokens = \
-            self._counter_cls(
-                name="vllm:spec_decode_num_draft_tokens",
-                documentation="Number of draft tokens.",
-                labelnames=labelnames,).labels(*labelvalues)
-        self.counter_spec_decode_num_accepted_tokens = \
-            self._counter_cls(
-                name="vllm:spec_decode_num_accepted_tokens",
-                documentation="Number of accepted tokens.",
-                labelnames=labelnames).labels(*labelvalues)
+        counter_drafts = self._counter_cls(
+            name="vllm:spec_decode_num_drafts",
+            documentation="Number of spec decoding drafts.",
+            labelnames=labelnames)
+        self.counter_spec_decode_num_drafts = make_per_engine(
+            counter_drafts, per_engine_labelvalues)
+
+        counter_draft_tokens = self._counter_cls(
+            name="vllm:spec_decode_num_draft_tokens",
+            documentation="Number of draft tokens.",
+            labelnames=labelnames)
+        self.counter_spec_decode_num_draft_tokens = make_per_engine(
+            counter_draft_tokens, per_engine_labelvalues)
+
+        counter_accepted_tokens = self._counter_cls(
+            name="vllm:spec_decode_num_accepted_tokens",
+            documentation="Number of accepted tokens.",
+            labelnames=labelnames)
+        self.counter_spec_decode_num_accepted_tokens = make_per_engine(
+            counter_accepted_tokens, per_engine_labelvalues)
 
         assert speculative_config is not None
         num_spec_tokens = (speculative_config.num_speculative_tokens
@@ -171,21 +176,36 @@ class SpecDecodingProm:
             documentation="Accepted tokens per draft position.",
             labelnames=pos_labelnames,
         )
-        self.counter_spec_decode_num_accepted_tokens_per_pos: list[
-            prometheus_client.Counter] = []
-        for pos in range(num_spec_tokens):
-            pos_labelvalues = labelvalues + [str(pos)]
-            self.counter_spec_decode_num_accepted_tokens_per_pos.append(
-                base_counter.labels(*pos_labelvalues))
+        self.counter_spec_decode_num_accepted_tokens_per_pos: dict[
+            int, list[prometheus_client.Counter]] = {
+                idx: [
+                    base_counter.labels(*lv, str(pos))
+                    for pos in range(num_spec_tokens)
+                ]
+                for idx, lv in per_engine_labelvalues.items()
+            }
 
-    def observe(self, spec_decoding_stats: SpecDecodingStats):
+    def observe(self,
+                spec_decoding_stats: SpecDecodingStats,
+                engine_idx: int = 0):
         if not self.spec_decoding_enabled:
             return
-        self.counter_spec_decode_num_drafts.inc(spec_decoding_stats.num_drafts)
-        self.counter_spec_decode_num_draft_tokens.inc(
+        self.counter_spec_decode_num_drafts[engine_idx].inc(
+            spec_decoding_stats.num_drafts)
+        self.counter_spec_decode_num_draft_tokens[engine_idx].inc(
             spec_decoding_stats.num_draft_tokens)
-        self.counter_spec_decode_num_accepted_tokens.inc(
+        self.counter_spec_decode_num_accepted_tokens[engine_idx].inc(
             spec_decoding_stats.num_accepted_tokens)
         for pos, counter in enumerate(
-                self.counter_spec_decode_num_accepted_tokens_per_pos):
+                self.
+                counter_spec_decode_num_accepted_tokens_per_pos[engine_idx]):
             counter.inc(spec_decoding_stats.num_accepted_tokens_per_pos[pos])
+
+
+def make_per_engine(counter: prometheus_client.Counter,
+                    per_engine_labelvalues: dict[int, list[str]]):
+    """Create a counter for each label value."""
+    return {
+        idx: counter.labels(*labelvalues)
+        for idx, labelvalues in per_engine_labelvalues.items()
+    }